SC68 is an emulator for Atari's Yamaha sound chipset and Amiga's Paula sound chipset. It has no idea about how the music is encoded/works since it executes original Motorola 68000 code. The original MC68000 code dumps PCM data into the emulated chipset registers... you will need to know a bit about how the orginal chipset works in order to create your analyser. Some original replay routines provide that information, so you would need to hack the emulator a bit to recover this information...
The other solution is to do it à la Winamp => render the PCM samples into the audio buffer and FFT the resulting audio buffer and then analyse the data...